Tuesday, December 18, 2007

Of Maps and Men

It's always nice when you find a gem. I just found out about a recent paper (pdf warning), published in Frontiers in Ecology, written to try and quantify what kind of human-created biomes exist, and where those biomes are found (A biome being a region characterized by distinct flora and fauna, as well as charactistic landforms, hydrology, and weather).

Figure 1: Small map of global anthropomorphic biomes. Click to see a larger, higher resolution version (*pdf warning) From Ellis, EC, Ramankutty, N. 2007. Putting people in the map: anthropogenic biomes of the world. Front Ecol Environ 2008; 6, doi: 10.1890/070062



The authors emphasize the fact that human-affected land accounts for 90% of global net primary production (energy produced by plants, over and above metabolic needs) as well as 80% of all forested territory. I don't, however, think that this is the most interesting result from this paper. Pretty much anyone with a background in modern ecology would have found those numbers unsurprising, and would have been revealed in a much simpler analysis. What the real importance of this paper stems from is how they discovered the different biome types. Rather than arbitrarily assigning different categories, they used cluster analysis (a method from statistical ecology) to discover groupings of data that "hung together" for many different variables. This does a lot to remove observer bias or researcher preconception from the final map.

This report doesn't just provide a very pretty map of human effects and variance in cultivation and settlement patterns (for real fun: a Google Maps version!). The best part of this report is the fantastic data set it provides. Anyone with even a vague interest in geographic-economic interactions, settlement patterns, or land-use patterns could use this to test any number of mechanism-driven models.

I do have a couple complaints, however: they don't specify what clustering algorithm they are using, except that it is from SPSS. There are several ways to cluster data, and depending on the structure of the data set, this can make a difference. I suspect, however, that the data they are using is likely fairly straight-forward to analyze, so the exact details of the algorithm shouldn't change the overall picture. Also, they may have published supplemental data that I just didn't find.

Tuesday, October 16, 2007

An interesting hypothesis

I have made an important discovery, that I am sure is of gripping interest to all of you, my loyal readers:
John K. Samson, lead vocalist and writer for the Weakerthans

is, in fact, the Tenth Doctor:
Doctor, if you're reading this, sorry for blowing your cover, but the truth had to come out at some point.

Tuesday, July 24, 2007

A moment of silence please

It appears that Weekly World News will be closing its doors permanently soon. This is pretty crushing for me, considering the endless hours of amusement that paper provided me, as well as providing an excellent way to misspend canteen funds from cadets. It was also my only truly reliable news source, providing a vast cornucopia of information I could be absolutely certain as being wrong, unlike the rest of the media, which might be correct occasionally.

So, raise your glass to Bat-Boy! We barely knew you.



(seen via Pharyngula)

Wednesday, May 09, 2007

Fact 1: The government and everything else, save perhaps a single poorly run waffle hut in Wisconsin, are run by a power hungry Conspiracy That Wants To Control Our Minds

Fact 2: Tinfoil and aluminum foil protect against mind control.

Question: why hasn't the CTWTCOM just altered the makeup of foil?

I'm now tempted to try running a sample through the spectrometer, but I'm not building up too much hope that it'll reveal the truth, since they've clearly subverted the mass spec manufacturers by now.

Saturday, April 21, 2007

That pretty much sums it up.


(From XKCD: A webcomic of romance, sarcasm, math, and language.)

Wednesday, April 18, 2007

Fun with numbers

I'm trying to avoid studying for a test, so here's some fun with economic stats:
Saskatoon population: 220000 est. (Wikipedia)
Saskatoon Population growth rate: 2.5% (www.sreda.com)
Canada's 2006 economic growth rate, minus it's population growth rate: ~2%* (CIA factbook)
Canada's 2006 per Capita income: 35,200 (Ibid)
Estimated cost of a Mars trip: One Trillion dollars (Milwaukee Journal Sentinel)

So: Calculated** year when Saskatoon can afford it's own Mars shot with one year's budget:
2114.


* This has to be done because population growth is a component of net growth rates. The adjusted rate is Canada's growth due to increases in labour productivity.
**Calculation used:
# of years until trip is affordable = ln(Trip cost/[current population size*current per capita income])/(economic growth rate + population growth rate)


Also: for those who don't want to wait on Saskatoon city council to decide to go to Mars, you personally will have the yearly income to do it around 2864.

Monday, February 19, 2007

At last! An excuse to wear more badges!




For those of a scientific bent, there's a new club in town: The Order of the Science Scouts of Exemplary Repute and Above Average Physique. As far as I can tell, it's primary goal is coming up with really awesome badges to compete for, which is a goal I am dead behind.

It is actually somewhat frightening realizing how many of these damned things I qualify for, especially for the more esoteric ones.

Here's the ones I figure I've achieved already:

Talking science: required for all members. Basically, you have to apt at annoying your friends and loved ones with science at any and all times.




I blog about science: Requires that at least a quarter of the blog be about science. This one might be iffy, but I figure if you count by post length, science still makes up a 1/4 of the stuff here.




"I'm pretty confident around an open flame": From flame-sterilizing aritificial insemination gear, to flaming bacterial smear equipment, to do lighting smokers to test hives, I think I've got this one cased.



"I may look like a scientist, but I'm actually a ninja": This might be true. How would you all know? Also, I have a set of Nun chucks around here somewhere, courtesy of one Mr. Shaw.




"Sexing Up Science": Controlled breeding experiments, AI'ing queen bees, breeding Drosophila, and semen extraction from drone bees. All in the name of Science. And no, I'm not ashamed of any of it.





"I can be a prick when it comes to science": It's so true. Just search the back-logs of this blog for proof of that.







"has frozen stuff just to see what happens" levels one and three: I've frozen things in both the freezer and in liquid nitrogen, because science demanded it.



"I will crush you with my math prowess": I know how to find out if a Hessian matrix is positive semi-definite, and am able to go on at lengths about the importance of the neutral equilibria that exists in two-species Lotka-Volterra predator-prey systems. I may not be an actual mathematician, but I'm not half bad at this stuff.


"inordinately fond of invertebrates": Bow to your hydrostatic/exo-skeletal betters, you damned spined, barely jumped up worms! Still not quite as awesome as lichen, though.





"knows how to collect semen from more than one (non-human) species": seriously, don't ask.






"I know what a tadpole is": kind of a freebee. Really, just for those who envy us elites who hold the semen badge.







"experienced with electric shock" level 1, 2, 3: For: being involved with shocking organisms with electricity (E. coli, to induce DNA to enter them), experience with the electrical shocking of humans, and being shocked myself. Really, the last two are somewhat cheats, since pretty much any farm kid who's lived around electric fencing can claim the same.

And that's the lot of them. Remind me never to try and upload this many pictures to blogger ever again.

Sunday, February 18, 2007

You may all already be aware of this...

Apparently, the English language and I only touch at tangents at the best of times. Also, I am very happy that Firefox 2 now has in-form spell-checking, or more people would threaten to kill me on a regular basis.


ps: Paul, you might know this: is there any mathematical term for a pair of equations which only touch when they are tangent to each other, i.e.: for all x where f(x) = g(x), f'(x) = g'(x)?
I'm just trying to pump up my geek cred here by being able to refer to my speaking skills with math lingo.

An important, life changing notice:

While you may find the song "Candy Girl" catchy when it was played in Dogma, downloading a significant amount of The Jackson 5 will:
1. Annoy your roomates
2. Cause horrific music to assail your ears when you set Winamp to random.
3. Make you doubt the eternal wisdom of Kevin Smith, which would be blasphemy.

Horrific abuses of population biology

Because I'm bored, and since absolutely no one who reads this gives a damn about population ecology, I'm going to post about it (also, this makes a nice precursor to the ever-elusive post on the biology of Pirates and Ninja that I've been threatening to post).

First: something old: the ecology of Vampires in Buffy the Vampire Slayer (warning: pdf file). This is actually a remarkably nicely written primer to modelling predator-prey populations, all wrapped up in Weadon-y [or Whedon, appearently] goodness. It sets out to answer the age old question: how the hell do vampires in Sunnydale not either kill everyone or get entirely wiped out?

Second: something new: a post from a blog I regularly scan, I'm a chordata, Urochordata! (with a pun like that, who could resist?). The poster, a population ecologist, has created a statistical model linking sanity in grad students with increased productivity! For those who don't want to read the whole thing, even if it contains an awesome graph, the primary conclusions are:

"1) Your sanity and productivity are intimately linked.
2) Being involved in the community and taking breaks to enjoy all that Northern California has to offer may seem insignificant, but, really, it’s what holds everything together.
3) Caffeine is your lord. Your master. Your father, mother, secret lover."


That third one there I can heartily endorse. I'm still a bit sketchy about California being good for my mental health though....

Sunday, February 11, 2007

A merry Darwinmas to all. A good time was had by all at the Yard (despite a slightly small turnout), and tommorow, I for one plan on celebrating by visiting the Burgess Shale exhibit at the Diefenbaker Center. Look for excited fan-boy-esque posting immediately following.

Thursday, February 08, 2007

The best moment of my day:

Taken from the bathroom stall wall discussions:


"God is dead."
-Nietzsche

"But Zombie Nietzsche lives!"
-Zombie Nietzsche

Wednesday, February 07, 2007

An update on the festivities

Well, from the looks of things, the night of the Darwinian goodness will be Sunday (it's actually a day early, but we just all have to promise to stay up until midnight). I figure 8 seems like a good time to start the festivities, but I'll probably show up around 7:30ish to try and secure a table, so feel free to come early (Hah! other people being early... that seems likely... :^) ) and feel free to dress as your favourite Victorian naturalist. (If anyone can figure out a good Baron Von Humbolt costume, I'd love to see it!)

hopefully see everyone there!

Friday, February 02, 2007

A quick survey...

How many people in the Saskatoon area would be free/willing to attend the (now) traditional Darwin Day celebrations on either the 11th or the 12th? It would likely be at the Yard, unless new and interesting suggestions for a location are posited.


(Also: a reminder: Paul McGann)

Wednesday, January 31, 2007

taken from a discussion with Paul...

A time line of present and future human eras:
1400 - 1900: Early Modern Era
1900 - 1970ish: Modern Era
1970 - 1999:Post-Modern Era
1999 - 2021: Post-post Modern Era
.
.
.
.
.
.
2345 - 2345: post ^ 57.82 Modern Era
.
.
.
3000 - 3001: It's Probably still the Present Era
.
.
.
.
.
4500 - 4511: The Era Before the last Era, We Think
4511 - 4512: The Era After the Last Era
.
.
.
.
5000 - heat death of the universe: We Came to Our Senses and Stopped Trying to Title the Time We're Living in Some Synonym of "Current" So As Not To Piss Off Future Historians Era.

Thursday, January 18, 2007

Paul Mcgann!

Paul Mcgann! That is all.

Sunday, December 10, 2006

So as not to incurr more blog-related wrath...

I've appearently been tagged for to do a list regarding 6 weird things about me by someone who shall remain nameless. Read on if you dare.

1. I once helped in the invention of a parasitic fern.

2. I may be the only person on earth to own an autographed plunger.

3. I have a favourite transcription factor family (KANADI baby! Three cheers for organ polarity in leaf-bearing plants!) and molecular mechanism (the type III bacterial secretory system)

4. I hate animals with backbones.

5. I enjoy watching terrible movies more than I enjoy normal ones.

6. I've worked out mathimatical models for whether or not ninjas could drive pirates to extinction (note, post on this upcoming).


I shall tag no one because of all my friends, the ones who haven't already done this list blog less than I do, which is an accomplishment.

Sunday, November 26, 2006

I aint'nt Dead

Sorry for the long, long delays. I've got a relatively large post in the works, but it's really on the back-burner these days. In the meantime, to keep you all pacified:

motivational posters I found on the inter-web!

Sunday, October 15, 2006

Pictures and posting at last

Well, I have now got my hands on some of the pictures from the summer. So, as promised, Eric cross-dressing! All these photos are taken from the wedding of my and TJ's friends, Cindy and Geoff McBain. Shaw and I were bride's maids for the proceedings.


1st off: The action shot! It's the battle we all knew was going to take place as soon as TJ and I both got swords... I guess just one more example of the violence inherent in the system.

2nd: The noble guards relax before the festivities: (I'm not quite sure what that is sticking out of my sporan).




Picture the 3rd: The wedding party in full, in the gorgeous Prince Albert National Park:
There also appears to be a substantial number of photos of my butt in this collection. I take no responsibility for that, and will not torture all you gentle folks' eyes with.

Well, I hope this saits the majority of my loyal readerships desires for posting, at least for the time being. And now I return me to my regularlarly scheduled biology term paper. Cheers!

Saturday, September 16, 2006

Finally posting due to public outcry

Well, the radio silence has gone on long enough I suppose. I was kind of hoping I could draw more Stan Rogers out of everyone, but I guess it isn't happening. Also, I appear to have been tagged by a meme, so in a desperate attempt to get meme-cooties off of me, here is:

ERIC.....EATING....CHEESE!!!!

(in asci art. Some of us don't have digital cameras readily availab
le...)


(you can tell its me because of the scruffy beard and misshapen head. And yes, that is actually cheese in my mouth, not some sort of cigar or Gene Simmons tongue.)

I now tag Kelly, Sheila, and TJ (hah! Now you have to post to your blog!!).

Also, hopefully I shall post real pictures from the summer soon, including pictures of me in a dress, Shaw and I engaged in mortal combat, and images of the legendary Feng Shui Dragon.

(note: TJ: Email me pictures!)

(excuse my lack of apostrophes in places. The school computers wont let me type them for some reason, and the only ones in this post are the ones spell-check caught.)

Wednesday, April 19, 2006

Natalie Portman is quite rapidly rising to the top of my list of freaking amazing actresses. I have a hard time forgiving anyone for the Star Wars prequels, but after watching V for Vendetta and Garden State, she's redeemed herself entirely.

In other news, it looks like I'll be moving into my new apartment May 1st, which hopefully will be my last move for the next two years.

Also, I despise every variety of animal with an Olympian passion. I'm now mentally no longer classifying zoologists as biologists. I'm lumping them under chemistry. (studying long dead animals is still biological. I am now convinced all animals evolved to create spectacular fossil displays.)

Sunday, April 09, 2006

They have my bid

Give your support to Hoth's bid for the 2014 Winter Olympics! It's what Yoda would have wanted.

Quote of the Week:

"Saskatchewan's standard of living would be significantly higher today if Grant Devine's parents had just gone out for a movie instead."
Dr. Howe, Econ 214